Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISIISMILVVIVAFFAGLEGILDQFQIHQPLVACTLIGLVTGHLEAGIILGGSLQMIALAWANIGAAVAPDAALASVAAAIILVKSGDFTQKGINFAFSTAVPLAIAGLFLTMIVRTISTALVHAGDKAASEGNFAAIERFHFIALLLQGLRIAFPAALLLAIPSSSVQSILEAMPDWLNGGMQVGGAMVVAVGYAMVINMMATREVWPFFALGFALAALNQLTLIAMGTIGVAIALIYISLSKMGGSKGTSNAGSNDPIGDILEDY--
1V8D Chain:A ((40-232))
-------------MEGIRRAAQRAAEEFLQAFPM-----------APGSLFVLGGS-----------TSEVLGTRPSLEAAHAVLEGLLPPLLERGVHVAVQAC--------------EHLNRALVVERETARAFG----KEEVAVFPHPKAG-----GAKATAAFLRFRDPVMVESLKAQAHGGMDIGGVLI-----------------------GMHLRPVAVPLRLSVRKIGEAVLLAAKTRPKLVG--GARAVYTREEMLKKLEEFLP
General information:
TITO was launched using:
RESULT:
Template:
1V8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165444 for 1541 contacts (-107.4/contact) +
2D Compatibility (PS) -19654 + (NN) -2927 + (LL) 9844
1D Compatibility (HY) -4400 + (ID) 1850
Total energy: -184431.0 ( -119.68 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_1V8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8D-query.scw
PDB file :
Tito_Scwrl_1V8D.pdb
: