Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNSEKVLNLIGLAQRAGRLITGEELVIKAIQNQQVSLIFLANDAGPNLTKKVTDKSNYYKTEVSTV-FSTLELSDALGKP--RKVVAVADAGFSKKMRTLMA
1W41 Chain:A ((1-96))
----VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSALAVVDPGASRILALGGK
General information:
TITO was launched using:
RESULT:
Template:
1W41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45362 for 740 contacts (-61.3/contact) +
2D Compatibility (PS) -10043 + (NN) -3270 + (LL) 20
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -63305.0 ( -85.55 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1W41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W41-query.scw
PDB file :
Tito_Scwrl_1W41.pdb
: