Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHRIDRVGMEIKREVNEILRLRVNDPRVQDVTITDVQMLGDLSMAKVFYTIHSTLASDNQKAQIGLEKATGTIKRELGKNLTMYKIPDLQFVKDESIEYGNKIDEMLRNLDKKD
2DYJ Chain:A ((4-93))
----GKAHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFRE-E---EGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRASP----------------
General information:
TITO was launched using:
RESULT:
Template:
2DYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49459 for 644 contacts (-76.8/contact) +
2D Compatibility (PS) -9716 + (NN) -2528 + (LL) 1356
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -66897.0 ( -103.88 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2DYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYJ-query.scw
PDB file :
Tito_Scwrl_2DYJ.pdb
: