Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTISSAEWEIMRVVWAQQNTTSNEILAVLLEKYDWTPSTVKTLLRRLLDKGYVSREKMGKGFSYSPLIDEDLAMMSEVDSVFQKVCQTKHVAIVRHLLESIPMTEKDRLNLQSSLEAKKGKTLERVACNCIPGQCQCH
1SD4 Chain:A ((7-125))
-EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK-----------------
General information:
TITO was launched using:
RESULT:
Template:
1SD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54865 for 725 contacts (-75.7/contact) +
2D Compatibility (PS) -12963 + (NN) -5841 + (LL) 1316
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -81803.0 ( -112.83 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1SD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD4-query.scw
PDB file :
Tito_Scwrl_1SD4.pdb
: