Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKISQYNKWSIRRLKVGAASVMIASGSIVALGQSHIVSADEMSQPKTTITAPTANTSTNVESSTDKALSKVTTMETSSEMPKMQNMAKVEKTSDKPMMVATSVRKMMATPTPVAMTKTTSVDEVKKSTDTAFKQTVDVPAHYVNAAKGNGPFLAGVNQTIPYEAFGGDGMLTRLILKSSEGAKWSDNGVDKNSPLLPLKGLTKGKYFYQVSLNGNTTGKEGQALLDQIKANDKHSYQATIRVYGAKDGKVDLKNMISQKMVTINIPHITTDMEVKNSLKMAFKEKVDVPAKYVSAAKAKGPF-LAGVNETIPYEAFGGDGMLTRLILKASEGAKWSDNGVDKNSPLLPLKDLTKGKYFYQVSLNGNTAGKKGQALLDQIKANGSHTYQATITIY---GTKDGKVDMNTILGQKTVMIHINVAKKDMNSTSMMMKKDKMTMPMKKEMT-SSKINTGMMMSNNKMSANMQMSSQAKSNDKAGKKMSMMSKNLPNTGETKQQNVGVLGMLSLAFATGLTALGLKKSKQR |
| 1CJD Chain:A ((15-383)) | LRNQQAMAANLQARQIVLQQ-----------------SYPVIQQVETQTFDPANRSVFDVTPA-NVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYY--DPDNQRHTETS-----------------GWHLHFVNTAKQGAPFLSSMVTDSPIKY--GDVM-----------------NVIDAPATIAAGATGELTMYYWVPLAYSETDLTG--------------------------------------AVLANVPQ------SKQRLKLEF-------ANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQNGY-----ILPLIDLSTLYNLENSAQAGLTPNVD-----FVVQYANLYRYLSTIAVFDNGGSFNAGTDINY-LSQRT---------ANFSDTR---KLDPKTWAAQTRRRIATDFPKGVYYCDNR-----------------DKPIYTLQYG----------NVGFVVNPKTVNQNARLLMGYEYFTSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 98412 for 2919 contacts (33.7/contact) +
2D Compatibility (PS) -38178 + (NN) -3107 + (LL) 11368
1D Compatibility (HY) -10000 + (ID) 3700
Total energy: 54795.0 ( 18.77 by residue)
QMean score : 0.099
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