Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKY----VNCQTTEALI-RTGVNHIGENRVDKFLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKR-AQKPVKCFLQVNISREDSKHGFTIE-QIDDALNLIS-RYDKIELIGIMTMAPLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMGMSRDYDIAIQ---NGSTFVRIGTSFFK
3CO8 Chain:A ((11-229))
-RIEFSKSSLAYNVQYTKQVSG----AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGID--D-FILILGPIDVKYAPIASKY-HFLTTVSSLDWLKSADKILGKEKLSVNLAVDTGM--NRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFA-------FQRQKNRWYELIDGL-------IMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYG
General information:
TITO was launched using:
RESULT:
Template:
3CO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116968 for 1591 contacts (-73.5/contact) +
2D Compatibility (PS) -20525 + (NN) -827 + (LL) 2240
1D Compatibility (HY) -7600 + (ID) 1400
Total energy: -145080.0 ( -91.19 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_3CO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CO8-query.scw
PDB file :
Tito_Scwrl_3CO8.pdb
: