Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLSSEEIIKMLPHRYPFLMVDRV---QSYKKGIIECRKNITINEPYFQGHFPQRPIVPGVLMIEMAAQSAALLYILDALDGSLPSLDELTAEKIAEKVGYLASVKNFKFKKIVTPGDQLNITCKSQSKLGHLLEIQVVIRDENKKEVASGRMLVSENGN
2GLM Chain:B ((27-131))
------EHILQILPHRYPMLLVDRITELQANQK--IVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFL--------AFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
2GLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46199 for 605 contacts (-76.4/contact) +
2D Compatibility (PS) -10854 + (NN) -5157 + (LL) 944
1D Compatibility (HY) -12000 + (ID) 2500
Total energy: -75766.0 ( -125.23 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2GLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLM-query.scw
PDB file :
Tito_Scwrl_2GLM.pdb
: