Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
1Z72 Chain:A ((17-221))
--VGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDG----YFQKAFKELKVAENDYLEVT-LHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDLAL---PEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGK---REDLTELQQRWNQAVALELAFFDIG
General information:
TITO was launched using:
RESULT:
Template:
1Z72.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108682 for 1587 contacts (-68.5/contact) +
2D Compatibility (PS) -21404 + (NN) -2596 + (LL) 500
1D Compatibility (HY) -11200 + (ID) 1800
Total energy: -145182.0 ( -91.48 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1Z72.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z72-query.scw
PDB file :
Tito_Scwrl_1Z72.pdb
: