Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLARQIAMELLDIQAVYLRPQQPFTWASGVKSPIYTDNRVTLSYPETRTLIENGFVKQIQKHFPNVDIIAGTATAGIPHGAIIADKMNLPFAYIRSKAKDHGVGNQIEGRVYSGQKMVIIEDLISTGGSVLEAVTAAQSQGIEVLGVVAIFTYQLAKAEQAFREADIPLVTLTDYNQLIKVAKVNGYITADQLVLLKKFKEDQMNWQS
2AEE Chain:A ((3-210))
MTLASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPK----GNQIEGRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTYELPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKFKEDQVNWQ-
General information:
TITO was launched using:
RESULT:
Template:
2AEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173433 for 1710 contacts (-101.4/contact) +
2D Compatibility (PS) -22161 + (NN) -8077 + (LL) -40
1D Compatibility (HY) -26800 + (ID) 7750
Total energy: -238261.0 ( -139.33 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_2AEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AEE-query.scw
PDB file :
Tito_Scwrl_2AEE.pdb
: