Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLEIEYKTLLNKDEFNRLTSLFSH--VQPITQTNYYFDTETFEMKAHRMSLRIRTLP--NRAELTLKIPREV---GNLEHNHDLTLEEAKYIVKNGQFPEDTEIASLILEKGVDPTKLAVFGQLTTTRREMETSIGLMALDSNIYADIKDYELELEVKQPK--QGKRDFDQFLKENNINFKY-AKSKVARFSATLKNN
1YEM Chain:A ((10-171))
----EVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKL------LRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFE--------------KAVEVFKRLG-----FKIQATIKKKRWVYKLNGVTLEVNRVEGIGD---FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI------
General information:
TITO was launched using:
RESULT:
Template:
1YEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12158 for 1070 contacts (-11.4/contact) +
2D Compatibility (PS) -15561 + (NN) 1185 + (LL) 2160
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -31174.0 ( -29.13 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_1YEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YEM-query.scw
PDB file :
Tito_Scwrl_1YEM.pdb
: