Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLFLSLERKFKAASDKEVSKQQEAYLRHHFKCYGIKSPERRMLYKELIKAAKRQAKIDWQLLDKCWQSDYREYHHFVLDYLLAMSQFLTYN---DCSRLEFYARHQQWWDSIDVLTKIFGNLSLKD-DKVMNL-LSEWSLDQDFWMRRLAIEHQLGFKEKTN--T--DILSLFILRNTGSQEFFINKAIGWALRDYSKYNKVWVKDFISNHYDELSTLSIREGSKYL |
2VGL Chain:B ((54-193)) | --------------------------------------------------------------VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -56488 for 896 contacts (-63.0/contact) +
2D Compatibility (PS) -13872 + (NN) -7577 + (LL) 5896
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -74441.0 ( -83.08 by residue)
QMean score : 0.340
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