Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYEKLLERFLTYVKINTRSNPNSTQTPTTQSQVDFALTVLKPEMEAIGLKDVHYL---PSNGYLVGTLPATSDRLCHKIGFISHMDTAD-FNAENITPQI-VDYKGGDIELGDSGYILSPKDFPNLNNYHGQTLITTDGKTLLGADDKSGIAEIMTAMEYLASHPEIEHCEIRVGFGPDEEIGI--GADKFDVKDFDVDFAYTVDGGPLGELQYETFSAAGLELTFEGRNVHPGTAKNQMINALQLAMDFHSQLPENERP----EQTDGYQGFYHLYDLSGT------VDQAKSSYIIRDFEEVNFLKRKHLAQDIADNMNEALQSERVKVKLY-DQYYNMKKVIEKDMTPINIAKEVMEELDIKPIIEPIRGGTDGSKISFMGIPTPNLFAGG-ENMHGRFEFVSLQTMEKAVDVILGIVAKD |
| 2F7V Chain:A ((7-367)) | -LLASTLEHLETLVSFDTRNPPR-----AIAAEGGIFDY-LRAQLP--GFQ-VEVIDHGDGAVSLYAVRG------TPKYLFNVHLDTVPDS-PHWSADPHVMRR--------------------------TEDRVIGLGV----CDIKGAAAALVAAANA-------GDGDAAFLFSSDEEANDPRCIAAFLARGLPYDAVLVAEPTM-SEAVLAHRGISSVLMRFAGRAG------DPAASALHQAMRWGGKALDHVESLAHARFGGLTGLRFNIGRVDGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPAA-----AHFEETFRGPSLPSG--DIARAEERRLAARDVADALDLP-IGNAVDFWTEASLFSAGGYTALVYGPGDIAQAHTADEFVTLAQLQRYVESVNRIINGS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F7V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68776 for 2904 contacts (-23.7/contact) +
2D Compatibility (PS) -35885 + (NN) -13002 + (LL) 2460
1D Compatibility (HY) -3600 + (ID) 2900
Total energy: -121703.0 ( -41.91 by residue)
QMean score : 0.420
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