Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIETLTQKNHRSDSGRNHIVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSLEEFMLSC-RGKVHLISKFADKVYSDE--NYNDDQDHYFMFGREDKGLPETFM-REHAEKALRIPMND-EHVRSLNVSNTVCMIVYEALRQQSFPNLELSHTYENDKLK
3L8U Chain:A ((15-175))
--------------LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKM------YWD-LDVHFYDSLNDFMNICSGKLHLITKFAN-KTYSDENYDDSE--HHYFLFGREDKGLPEEFMRQHSE-KALRIPVNDQH-VRSLNLSNTVCMIVYEALRQQDFIGLELSHT-------
General information:
TITO was launched using:
RESULT:
Template:
3L8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89640 for 1059 contacts (-84.6/contact) +
2D Compatibility (PS) -15663 + (NN) -3926 + (LL) 1620
1D Compatibility (HY) -17200 + (ID) 5500
Total energy: -130309.0 ( -123.05 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3L8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8U-query.scw
PDB file :
Tito_Scwrl_3L8U.pdb
: