Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
4MA9 Chain:B ((1-186))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGKI
General information:
TITO was launched using:
RESULT:
Template:
4MA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104167 for 1367 contacts (-76.2/contact) +
2D Compatibility (PS) -20461 + (NN) -10322 + (LL) 208
1D Compatibility (HY) -20800 + (ID) 5600
Total energy: -161142.0 ( -117.88 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_4MA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MA9-query.scw
PDB file :
Tito_Scwrl_4MA9.pdb
: