Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQQYFVNGEAGAY-VTIEDKDTIKHMFNVMRLTEDDQVVLVFDDAIKRLAKVVDSSAHRF--QILEELDNNVEMPVQVTIASGFPKGDKLDFVTQKATELGAAAIWGFPADWSVVKWDGKKLAKKEDKLAKIALGAAEQSKRNRLPQVRLFEKKADFQAELAGFDKIFIAYEESAKEGELSALAQNLQTVK--AGDKLLFIFGPEGGISPKEIAAFEEVGAIKVGLGPRIMRTETAPLYALSVISYSAELL |
| 1VHY Chain:A ((3-242)) | IPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVI----RMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLM---------KLQDWCAEN-DGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 47580 for 1737 contacts (27.4/contact) +
2D Compatibility (PS) -23262 + (NN) 6246 + (LL) 640
1D Compatibility (HY) 8400 + (ID) 950
Total energy: 38654.0 ( 22.25 by residue)
QMean score : 0.153
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