Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNVKKHHLAYGAITLVALFSCILAVMVIFKSSQVTTESLSKADKVRVAKKSKMTKATSKSKVEDVKQAPKPSQASNEAPKSSSQSTEANSQQQVTASEEAAVEQAVVTENTPATSQAQQAYAVTETTYRPAQHQTSGQVLSNGNTAGAIGSAAAAQMAAATGVPQSTWEHIIARESNGNPNVAN----ASGASGLFQTMPGWGSTA---TVQDQVNSAIKAYRAQGLSAWGY |
| 1GBS Chain:A ((43-121)) | ------------------------------------------------------------------------------------------------------------------------------------------------KAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVLKNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILTDFIKRIQKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GBS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8788 for 486 contacts (-18.1/contact) +
2D Compatibility (PS) -8150 + (NN) -5682 + (LL) 10840
1D Compatibility (HY) -2000 + (ID) 550
Total energy: -14330.0 ( -29.49 by residue)
QMean score : 0.410
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