Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAELENRKQFAQMLAPGVKTLKLHPDYKVRRKKNEKTGQSYIDKIALQLGVSPNTIKSWIGQMGANYIPGRIDDGKLFGMIWIILEKTDLDIEWLTDLLEATTIPVIKPALPVWAASCLKKAKILRKDGLFGAPSEGEIENVVKRLFHDRPGQETNALTEQPITHNLPSRWSGRFIGRSFDMEAIRQWMLSPSPVCLITGWAGMGKTTIALEAAYSCVDDTSVWPAFNSIIWVSADWK----GLSFSDFLNTIAYQLGRKEQ------------I-----DKS----INVKRFVVRNALANYT--REKPILLIVDSIDTAER----DIHEFITSL---PQGVKVLLTARENVKQ--TY-----RES--FGEMTAIQLSGLDQTDAHEFFQQEVHHCLQTCNLPRKREKLEQLLHLSSDLKNEFISATAGNPKAMALSIAYMSDDDIPAQQLIH-ELGKAGYSLLELFEFLFGRTWDRCN---EDTRKLWQTLCFFSKPPDEKSLAAAA------GLDARRFHYAMEQMRSYALIQPERSQGRTQYLAHQTVVAYGEQHLSEQHEYEKEARNRWAHYYIDYAETHLKREQPNSIYWSYLLGRNLDQMKQEWPNILKVIQWASETEQKEILIELITRISHFLSRINLPLRIEYGRKAADAAHHLGQHTREAYFRIDTSGWALMEVNDLDGALQQIEAGLKILEQSDAHDAYDLKVWGHALKARLFLKDGQQEKAETILNEIENQPISPTIQHRVLLVRGDLSFARGYHVEAIQLYEAANEISSTYGGEKTIEAYFNLGVAYVKCDQFEKAEEAFEQMLYDKHNANQVELIYYHYGMAQLLYRKGEKTKAVESNQKAIRLIDSWEPAIGIRGEVERLARATKENE
2FNA Chain:A ((11-356))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------NRKDFFDREKEIEKLKGL---RAPITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFN----RLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA-----------------DIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKN-LDFAINQTLEY----AKKLILKEFENFLHGREIARKRYLNIMRTLSKCGK---WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE---GEKYCPSEPLISLAF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2FNA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1276 -169107 -132.53 -587.18
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : -132.53
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.520

(partial model without unconserved sides chains):
PDB file : Tito_2FNA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2FNA-query.scw
PDB file : Tito_Scwrl_2FNA.pdb: