Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNWMEFISSIVKSIIWPVAIIILVFKLKQPVSNLI---STL-AKIKYKDWEFEFTIDQKLDKISFQLNKENQYGTDDQNLKDS-LNLESNSEITEETHSHYNEKTSIKGDNDLLLK-MEMIRLYGAVKNLYEKVSEKDDAADKSQGIGMLYMVDYLK-RHKILNDSFAESLLDIMNIVHDLEKSHISQS---YIM--NKFFWNVDKSVKRLMEITSNYVAENTAGETSN------
5D6H Chain:A ((1-238))----------ATFLIWPIYPKIEANEKATAVWLQNTGKTDAMVQIRVFKWNQDGLKDNYSEQSEIIPSPPVAKIKAGE---KHMLRLTKSVNLPDGKEQSYRLIVDELPISKVSFQMRYSIPLFAYGKGIGSGLTEESQKLNAKNALAKPVLQWSVRNNSELYLKNNGQKFARLSALKTSKTGNDISLGAFGYVLSNSTVKFAIDQSTAHELAKTSKIYGVDSSGIKQELIEITK


General information:
TITO was launched using:
RESULT:

Template: 5D6H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 957 71724 74.95 351.59
target 2D structure prediction score : 0.22
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : 74.95
2D Compatibility (Sec. Struct. Predict.) : 0.22
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.089

(partial model without unconserved sides chains):
PDB file : Tito_5D6H.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5D6H-query.scw
PDB file : Tito_Scwrl_5D6H.pdb: