Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPRRK----FEPGEGALLAPQSIEPSRRWGLPLALTASAV--------VMAAAISACALMRISHESHQRAAHKDIVMLSDVRSFMTMFTSPDPFHANEYAERVLSHATGDFAKQYHERANDILIRISGVEPTTGTVLDAGVQRWNEDGSANVLVVTQITSKSADGKRVVSNANRWLVTAKQEGNEWKISSLLPVI
3HVA Chain:A ((266-427))
VSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENH--------------LFELNGRSAQATLSIGVAGLDEKTA--------------KAQDVMNRAHRCADDAARKGGS-QIKQ-----
General information:
TITO was launched using:
RESULT:
Template:
3HVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26286 for 1150 contacts (-22.9/contact) +
2D Compatibility (PS) -15805 + (NN) -7090 + (LL) 3532
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -48299.0 ( -42.00 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_3HVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVA-query.scw
PDB file :
Tito_Scwrl_3HVA.pdb
: