Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLW-QIVNENNANRYTNYQSRTSRPIPVVVLTRR
3R5R Chain:E ((6-110))
--------------------------------------PVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTAR--DATDEERAEYWPQLVTMYPS--YQDYQSWTDRTIPIVVC---
General information:
TITO was launched using:
RESULT:
Template:
3R5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49127 for 745 contacts (-65.9/contact) +
2D Compatibility (PS) -11573 + (NN) -7538 + (LL) 2580
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -77208.0 ( -103.63 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_3R5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5R-query.scw
PDB file :
Tito_Scwrl_3R5R.pdb
: