Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASAKLSRMVCLLCGFFSTGISMASSLILLSASDLAGQWTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRVQKGDGGQLVLRRATP--
3HJ7 Chain:A ((5-134))
KGYWFELPVPALLP---LPNGYAIISEFGEHYPRKQAGNDWFVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRMERDRWPIVEDADGRILWVPGLKKSAFEAQNRGQARYILLQYQAMNS
General information:
TITO was launched using:
RESULT:
Template:
3HJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32524 for 921 contacts (-35.3/contact) +
2D Compatibility (PS) -12834 + (NN) 1516 + (LL) 16
1D Compatibility (HY) -800 + (ID) 900
Total energy: -45526.0 ( -49.43 by residue)
QMean score : 0.117
(partial model without unconserved sides chains):
PDB file :
Tito_3HJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJ7-query.scw
PDB file :
Tito_Scwrl_3HJ7.pdb
: