Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAA-SRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG
1GQ9 Chain:B ((5-238))
------IVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVEVMHKV---EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAA-EPSTVKVVVNTRQDALYFSRSPIPYPRNA---------EKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATG-PGVDTPACLEKVRALMA-
General information:
TITO was launched using:
RESULT:
Template:
1GQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119248 for 1863 contacts (-64.0/contact) +
2D Compatibility (PS) -25841 + (NN) -13672 + (LL) 1324
1D Compatibility (HY) -18000 + (ID) 5300
Total energy: -180737.0 ( -97.01 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1GQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GQ9-query.scw
PDB file :
Tito_Scwrl_1GQ9.pdb
: