Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
3P6D Chain:A ((6-139))
GSMCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA-
General information:
TITO was launched using:
RESULT:
Template:
3P6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43335 for 958 contacts (-45.2/contact) +
2D Compatibility (PS) -14967 + (NN) -3235 + (LL) 104
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -78083.0 ( -81.51 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3P6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P6D-query.scw
PDB file :
Tito_Scwrl_3P6D.pdb
: