Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4LYH Chain:B ((2-170))
MTEYKLVVVGACGVGKSALTIQLIQNHFV----------YRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK--------------------
General information:
TITO was launched using:
RESULT:
Template:
4LYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112344 for 1280 contacts (-87.8/contact) +
2D Compatibility (PS) -17668 + (NN) -7887 + (LL) 716
1D Compatibility (HY) -19600 + (ID) 7050
Total energy: -163833.0 ( -127.99 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4LYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYH-query.scw
PDB file :
Tito_Scwrl_4LYH.pdb
: