Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3KAD Chain:A ((11-167))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERPS------------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3KAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25189 for 1111 contacts (-22.7/contact) +
2D Compatibility (PS) -15614 + (NN) -10291 + (LL) -372
1D Compatibility (HY) -15600 + (ID) 7150
Total energy: -74216.0 ( -66.80 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3KAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KAD-query.scw
PDB file :
Tito_Scwrl_3KAD.pdb
: