Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
3CM2 Chain:C ((27-128))
-------------STNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR--
General information:
TITO was launched using:
RESULT:
Template:
3CM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25656 for 703 contacts (-36.5/contact) +
2D Compatibility (PS) -11104 + (NN) -6522 + (LL) 344
1D Compatibility (HY) -14000 + (ID) 5100
Total energy: -62038.0 ( -88.25 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3CM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CM2-query.scw
PDB file :
Tito_Scwrl_3CM2.pdb
: