Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
4NBN Chain:B ((10-271))
------MFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQAARGN--------------------TNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK--
General information:
TITO was launched using:
RESULT:
Template:
4NBN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177336 for 2019 contacts (-87.8/contact) +
2D Compatibility (PS) -25556 + (NN) -5285 + (LL) 1692
1D Compatibility (HY) -36000 + (ID) 12050
Total energy: -254535.0 ( -126.07 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4NBN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBN-query.scw
PDB file :
Tito_Scwrl_4NBN.pdb
: