Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
2NO6 Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQ---------------GGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKL-DAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQF--SLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFK-KYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2NO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118557 for 1720 contacts (-68.9/contact) +
2D Compatibility (PS) -23057 + (NN) -5388 + (LL) 1284
1D Compatibility (HY) -33200 + (ID) 10900
Total energy: -189818.0 ( -110.36 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_2NO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NO6-query.scw
PDB file :
Tito_Scwrl_2NO6.pdb
: