Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITFLPIIFSI-LVVVTFVIGNFANGFIALVNSTE---WVKRQKISFADQI---------VTA-L-AVSRVGLLWVLLL----NWYSTVLNPAFCSVELRTTAYNIWAVTGHFSN---WPATS--LSIFY-------LLKIANFSNLI-FLRL----KRRVK-SVILVVLLGPLLFLACHLFVV-NMNQIVWTKEYEGNMTWKIKLR--RAMYLSDTTVTMLANLVPFTVTL------ISFLLLVCSLCK-HLKKMQLHGKGSQ-DPST-------KVHIKVLQTVISFF-LLR------------AIYFVSVIISVWSF--KNLENKPVFMFCQAIGFSCSSAHPFILIWGNK--------------KLKQTYLSVLWQMRY--- |
| 3B7F Chain:A ((16-393)) | ---SAPESGPVMLLVATI------KGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTLGPTVFRSDDGGGNWTEATRPPAFNKAPGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEPDGPKMHSILVDPRDPK-----HLYIGMSSGGVFESTD--AGTDWKPLNRGCAANFLPDPNVEFGHD--PHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASADEGEHWQCIASHLPHIYAVQSARP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B7F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228043 for 2018 contacts (-113.0/contact) +
2D Compatibility (PS) -29747 + (NN) 8976 + (LL) 2132
1D Compatibility (HY) 2400 + (ID) 2900
Total energy: -247182.0 ( -122.49 by residue)
QMean score : 0.156
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