Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVGCPEPEPPRSLTCCGPGTAPGPGAGVPLLTEDMQALTLRTLAASDVTKHYELVRELGKGTYGKVDLVVYKGTGTKMALKFVNKSKTKLKNFLREVSITNSLSSSPFIIKVFDVVFETEDCYVFAQEYAPAGDLFDIIPPQVGLPEDTVKRCVQQLGLALDFMHGRQLVHRDIKPENVLLFDRECRRVKLADFGMTR--RVGCR---VKRVSGTIPYTAPEVCQAGRADGLAVDTGVDVWAFGVLIFCVLTGNFPWEAASGADAFFEEFVRWQRGRLPGLPSQWRRFTEPALRMFQRLLALEPERRGPAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESGSGSRPAPPAVGSVPLPVPVPVPVPVPVPVPEPGLAPQGPPGRTDGRADKSKGQVVLATAIEICV |
| 2YM8 Chain:A ((9-253)) | ----------------------------------------------------WDLVQTL-----GEVQLAVNRVTEEAVAVKIV--------NIKKEICI-NKMLNHENVVKFYGHRRE--IQYLFL-EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD--NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA----EPVDVWSCGIVLTAMLAGELPWDQPSDS---CQEYSDWKEKKTYLNP--WKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPLK-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148553 for 1728 contacts (-86.0/contact) +
2D Compatibility (PS) -23448 + (NN) -13252 + (LL) 5092
1D Compatibility (HY) -20400 + (ID) 3850
Total energy: -204411.0 ( -118.29 by residue)
QMean score : 0.451
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