Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGQVTSALSPCISYARGNGANPTAACCSGVRSLAGAARSTADKQAACKCIKSAAG-------GL-----NAGKAAGIPSKCGVSVPYAISAKVDCSKIR
3OB4 Chain:A ((428-485))
-------------------------QERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10476 for 254 contacts (-41.2/contact) +
2D Compatibility (PS) -4963 + (NN) -2794 + (LL) 2448
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -18585.0 ( -73.17 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: