Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASRTAPAAATKCDPLALRPCAAAIL-WGEAP-----STACCAGLRAQKRCLCRYAKN-PD--LRKYINSQNSRKVAAACSVP-APRC-----------------------------
1F9M Chain:A ((10-121))
-MEAIVGKVTEVNKDTF---WPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11024 for 391 contacts (-28.2/contact) +
2D Compatibility (PS) -8030 + (NN) -4306 + (LL) 160
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -27000.0 ( -69.05 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: