Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-GVVGVAGAGC-----NAGQLTVCTGAIA--GGARPT-----------AACCSSLRA-QQGCFCQFAK----DPRYGRYVNS--PNARKAVSSCGIALPTCH-
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45828 for 455 contacts (-100.7/contact) +
2D Compatibility (PS) -7798 + (NN) -3411 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -60737.0 ( -133.49 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: