Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------AVVPPSRCNPTLLTPCAGPALFGGPVPPACCAQLRAQAACLCAYAR-SPNYGSYI-----RSPNARRLFAVCGLPMPQCS-------------------------------------------------
1LU4 Chain:A ((1001-1134))
ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTP----WCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL
General information:
TITO was launched using:
RESULT:
Template:
1LU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41744 for 432 contacts (-96.6/contact) +
2D Compatibility (PS) -7787 + (NN) -6845 + (LL) 56
1D Compatibility (HY) -4400 + (ID) 500
Total energy: -61220.0 ( -141.71 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1LU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LU4-query.scw
PDB file :
Tito_Scwrl_1LU4.pdb
: