Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVNPCVAYGL----GRAP-------IAPCCRALNDLRFVDSRNLRRAACRCLVGVVNRNP---G---------LR--------RNNRFQNVPGDCRNNFVRPFWWRPRIQCNRVNLMDKLEYLDAEE
1B1U Chain:A ((15-107))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI-------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLAT----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29344 for 373 contacts (-78.7/contact) +
2D Compatibility (PS) -6138 + (NN) -1740 + (LL) 3076
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -35996.0 ( -96.50 by residue)
QMean score : 0.208
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: