Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVSSNLVPCFDYVRS---GG--P-V------------PPACCNGIRTINGLAKTTPDRQAACNCLKSLAGSVS----GVN-----PGNAESLPGKCGVNVPYKISTSTNCATVK
1W2Q Chain:A ((22-114))
------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME-----N-TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28478 for 393 contacts (-72.5/contact) +
2D Compatibility (PS) -6504 + (NN) 416 + (LL) 1412
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -35854.0 ( -91.23 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: