Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------------APPSCPTVTTQLAPCLSYIQGGGDPSVPC---CTGINNIYELAK-----------TKEDRVAICNCLKTAFTHA-----GNVNPTLVAQLPKKCGISFNMPPIDKNYDCNTISMY------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA--GSVVDALRAVRNA-----APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY----LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22625 for 419 contacts (-54.0/contact) +
2D Compatibility (PS) -8971 + (NN) -4318 + (LL) -456
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -38820.0 ( -92.65 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: