Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIECSDVLSRPVHCLSYFVTPR--AT-L-T---------------PTSACCRESEEVLGMANSMGAKEDLCNCFVGLIRGF---R-P-------NPNKIEGLLSSCALQLFFPIDPVTALPDCTQIQ
1PSY Chain:A ((25-119))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48266 for 489 contacts (-98.7/contact) +
2D Compatibility (PS) -6318 + (NN) -39 + (LL) 1936
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -55187.0 ( -112.86 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: