Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TITCGQVASAVGPCASYLQK---GGSV-----------PAGCCSGIKSLNSAAKTTVDRQAACKCLKTFSGS-I------PG----INFGLASGLPGKCGVSVPYKISPSTDCSKVT
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27072 for 336 contacts (-80.6/contact) +
2D Compatibility (PS) -6091 + (NN) 243 + (LL) 1716
1D Compatibility (HY) -5600 + (ID) 650
Total energy: -37454.0 ( -111.47 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: