Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----VTCDPVELSACANAITSSSPP-----SAICCSKLKQQRPCLCQYVKN-PNLQKL-VNSPNAKKVATICGS-PFPNC----------------------------
1SYR Chain:A ((9-111))
MVKIVT-SQAEF----DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA
General information:
TITO was launched using:
RESULT:
Template:
1SYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7829 for 341 contacts (-23.0/contact) +
2D Compatibility (PS) -6849 + (NN) -2419 + (LL) 372
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -20975.0 ( -61.51 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1SYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYR-query.scw
PDB file :
Tito_Scwrl_1SYR.pdb
: