Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SVDCTTLVLSMADCLSFVSNDSTS--------KKP-----------EGTCCSGLKTVLGTDAECLCEAFKSSA-------QF-G--VVLNVTKALALPSACKIKAPPASNCG
1PSY Chain:A ((26-116))
---------DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22478 for 399 contacts (-56.3/contact) +
2D Compatibility (PS) -6192 + (NN) -2501 + (LL) 696
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -34625.0 ( -86.78 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: