Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSTICKMPVAGLMSCKPSVT----PP-NPTA-------PSADCCSALSHADINCLCSYKNSNLLP------SL-G----IDPKLAMQLPGKCKLPHPANC
2LVF Chain:A ((16-105))
---------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13424 for 381 contacts (-35.2/contact) +
2D Compatibility (PS) -6868 + (NN) -3229 + (LL) 772
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -25999.0 ( -68.24 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: