Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-QCDPEQLVACASPIFYGT----APSESCCSNLREQQKEG---CLC------QYAKDP-MYASYVNNTNARKTIAACGIPI-------PSC----------------------------------
1XPJ Chain:A ((1-124))
MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHT-LPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEKS
General information:
TITO was launched using:
RESULT:
Template:
1XPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16219 for 350 contacts (-46.3/contact) +
2D Compatibility (PS) -7256 + (NN) -3214 + (LL) -80
1D Compatibility (HY) -400 + (ID) 500
Total energy: -27669.0 ( -79.05 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1XPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XPJ-query.scw
PDB file :
Tito_Scwrl_1XPJ.pdb
: