Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCTSQLN---NLNVCAPFVVP------GAAN-------TNPNAECCNALEAVQHDCLCSTLQ----------------------ISSRLPSQCNLPP-LTCGN
1SM7 Chain:A ((4-105))
-KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47768 for 403 contacts (-118.5/contact) +
2D Compatibility (PS) -6328 + (NN) -1249 + (LL) 40
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -61855.0 ( -153.49 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: