Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKNTTPDMEAFKMAPCASAAQDEN---S--S----VSSQCCARVKKIGQNPACLCAVMLSN---TAK------S---S--------GIKPEIAMTI--PKRCNIADRPVGYKCGAYTLP
1BEA Chain:A ((16-109))
---------------PLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADI--PAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFAATLVTEAECNLATI------------
General information:
TITO was launched using:
RESULT:
Template:
1BEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20418 for 403 contacts (-50.7/contact) +
2D Compatibility (PS) -6557 + (NN) -2143 + (LL) 612
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -33456.0 ( -83.02 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1BEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BEA-query.scw
PDB file :
Tito_Scwrl_1BEA.pdb
: