Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSSSSCTNVLVSMSPCLDYIQGNSS--KP-------SSSCCSQLANVVRSQPQCLCEVLNG--GAS--SL------------G--VSV--NQTQAMALPTACNVKTPPASQCNATIL
1B1U Chain:A ((16-109))
-----------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH---------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37596 for 388 contacts (-96.9/contact) +
2D Compatibility (PS) -6319 + (NN) -1432 + (LL) 1648
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -48049.0 ( -123.84 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: