Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ESNNCSKGA--NYFFPCINYVGGF----S------PKP-----------AKDCCSGLEELNKMAKEKEGPENICQCIEDMAYVTN----V-P----FIASRVQSLPEDCHIHLSFPISISMNCSRV
1PSY Chain:A ((17-121))
---QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53739 for 550 contacts (-97.7/contact) +
2D Compatibility (PS) -7499 + (NN) -2693 + (LL) 1512
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -65919.0 ( -119.85 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: