Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------VTCSPTQLSSCVSAITSSSPP-----SKLCCSKIKEQKPCLCQYLRN-PNLKRF-INTPNARKVASTCGT-PFPRC-----------------------------
1XFL Chain:A ((1-114))
MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA
General information:
TITO was launched using:
RESULT:
Template:
1XFL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4510 for 380 contacts (-11.9/contact) +
2D Compatibility (PS) -7045 + (NN) 83 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -15172.0 ( -39.93 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1XFL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XFL-query.scw
PDB file :
Tito_Scwrl_1XFL.pdb
: