Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLL--SLSDCLTYVEAGSN--------LTKP-----------EKPCCPELAGLVESTPQCLCYLLDKNATSS-----Y-G--FNIDMNRALNLPTVCKVSTPPVSLCSG
1PSY Chain:A ((14-116))
-----------SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24932 for 519 contacts (-48.0/contact) +
2D Compatibility (PS) -7661 + (NN) -2417 + (LL) 744
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -37966.0 ( -73.15 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: