Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------VTCNALQLSPCASAIT-SSTPP-----SPLCCSKLKEQRPCLCNYVKD-PN--LQKLVNSPNARKVASICGSP-FPNC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFW---PIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11649 for 338 contacts (-34.5/contact) +
2D Compatibility (PS) -6926 + (NN) -1978 + (LL) 60
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -23393.0 ( -69.21 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: